PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi4g26520.5.p
Common NameBRADI_4g26520, LOC100835567
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 443aa    MW: 50403 Da    PI: 7.2441
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi4g26520.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS279.11.3e-85214394374
              GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfsh 95 
                       +L ecA +v++g++ +++  L +++elas  + p+qRl   ++  L +rl+r +++ ++al  ps+  e        a++ f  +sP+l  ++
  Bradi4g26520.5.p  21 VLCECAVHVTEGSFDKTDCSLRKIRELASIVDGPLQRLSLIIADSLFRRLLRPMQGFASALiDPSRYLE--KWCLRVARNSFASISPYLATGF 111
                       699*************************************************99999988854544442..3444457778************ PP

              GRAS  96 ltaNqaIleavege..ervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                       +t N+aIle v+ +  + v iiD++ s  +  QW+ +l+ +  Rp+gpp+lR+T+v++    ++e l  ++  L+k A +l  +f+f+  v+ 
  Bradi4g26520.5.p 112 VTINRAILEQVQDKqlQVVRIIDLSGSttHQWQWLKILHDFHGRPGGPPELRLTVVHE----DSEFLDYMQTLLSKQAGTLMPSFHFDK-VVG 199
                       ************998999******8651155678999*********************....99*************************.799 PP

              GRAS 185 rledleleeL....rvkpgEalaVnlvlqlhrll............................................desvsleserdevLk 229
                       rle+l++++L    +++ gEa++++++lq+hrll                                            + + ++++   ++L+
  Bradi4g26520.5.p 200 RLEALDFSNLreilKINFGEAVVISCALQMHRLLavdddddasrdgiaqlqqmankahlkqmmmassprstlsypqtpSPQRQIPKLLVSFLS 292
                       9****9999844335555*********************************************************988666677778889*** PP

              GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                       +v+ l+P++vv++eqeadhn++ F erf+e l+yy+alfdsl +a ++re++er+ vEr+ll++ei+n++ cega+r erhe+l++W++ +++
  Bradi4g26520.5.p 293 AVRALKPNIVVMMEQEADHNAPLFRERFAEMLRYYAALFDSLnAAAAGREDDERARVERVLLREEIKNMLVCEGAQRHERHEKLSQWEMHMNR 385
                       ******************************************989999999****************************************** PP

              GRAS 322 aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       + F++vpls +a  + k  +   + ++   +ee+++ l+l W +  L+svSaWr
  Bradi4g26520.5.p 386 CEFQSVPLSFDAIREGKEKMMSSGlKECRGIEEDKHRLLLSWGETHLYSVSAWR 439
                       ****************99999999888899***********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.311418IPR005202Transcription factor GRAS
PfamPF035144.5E-8321439IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MHGAGSQEQR MQDHLAQLGP VLCECAVHVT EGSFDKTDCS LRKIRELASI VDGPLQRLSL  60
IIADSLFRRL LRPMQGFASA LIDPSRYLEK WCLRVARNSF ASISPYLATG FVTINRAILE  120
QVQDKQLQVV RIIDLSGSTT HQWQWLKILH DFHGRPGGPP ELRLTVVHED SEFLDYMQTL  180
LSKQAGTLMP SFHFDKVVGR LEALDFSNLR EILKINFGEA VVISCALQMH RLLAVDDDDD  240
ASRDGIAQLQ QMANKAHLKQ MMMASSPRST LSYPQTPSPQ RQIPKLLVSF LSAVRALKPN  300
IVVMMEQEAD HNAPLFRERF AEMLRYYAAL FDSLNAAAAG REDDERARVE RVLLREEIKN  360
MLVCEGAQRH ERHEKLSQWE MHMNRCEFQS VPLSFDAIRE GKEKMMSSGL KECRGIEEDK  420
HRLLLSWGET HLYSVSAWRP RG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-214143926375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237975.10.0PREDICTED: scarecrow-like protein 3 isoform X1
RefseqXP_010237976.10.0PREDICTED: scarecrow-like protein 3 isoform X1
TrEMBLA0A0Q3EQ720.0A0A0Q3EQ72_BRADI; Uncharacterized protein
STRINGBRADI4G26520.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60438176
Representative plantOGRP1616933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.12e-53scarecrow-like 3